A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2182887



Internal ID7853998
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:166585502..166586678hg38UCSC Ensembl
Outerchr6:166585291..166586892hg38UCSC Ensembl
Innerchr6:166998990..167000166hg19UCSC Ensembl
Outerchr6:166998779..167000380hg19UCSC Ensembl
Innerchr6:166918980..166920156hg18UCSC Ensembl
Outerchr6:166918769..166920370hg18UCSC Ensembl
Cytoband6q27
Allele length
AssemblyAllele length
hg381602
hg191602
hg181602
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4890984
SamplesNA18507
Known GenesRPS6KA2
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2182887
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer