Variant Details

Variant: esv2177498

Internal ID

7848609

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr2:117983639..117983663	hg38	UCSC Ensembl
Outer	chr2:117983434..117983863	hg38	UCSC Ensembl
Inner	chr2:118741215..118741239	hg19	UCSC Ensembl
Outer	chr2:118741010..118741439	hg19	UCSC Ensembl
Inner	chr2:118457685..118457709	hg18	UCSC Ensembl
Outer	chr2:118457480..118457909	hg18	UCSC Ensembl

Cytoband

2q14.1

Allele length

Assembly	Allele length
hg38	430
hg19	430
hg18	430

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4649135

Samples

NA18507

Known Genes

CCDC93

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2177498

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a