A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2174980



Internal ID7846091
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:47976135..47976331hg38UCSC Ensembl
Outerchr4:47976045..47976448hg38UCSC Ensembl
Innerchr4:47978152..47978348hg19UCSC Ensembl
Outerchr4:47978062..47978465hg19UCSC Ensembl
Innerchr4:47672909..47673105hg18UCSC Ensembl
Outerchr4:47672819..47673222hg18UCSC Ensembl
Cytoband4p12
Allele length
AssemblyAllele length
hg38404
hg19404
hg18404
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4565480
SamplesNA18507
Known GenesCNGA1
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2174980
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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