A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2171055



Internal ID7495480
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:133514092..133514429hg38UCSC Ensembl
Outerchr9:133513899..133514636hg38UCSC Ensembl
Innerchr9:136379214..136379551hg19UCSC Ensembl
Outerchr9:136379021..136379758hg19UCSC Ensembl
Innerchr9:135369035..135369372hg18UCSC Ensembl
Outerchr9:135368842..135369579hg18UCSC Ensembl
Cytoband9q34.2
Allele length
AssemblyAllele length
hg38738
hg19738
hg18738
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4823885
SamplesNA18507
Known GenesTMEM8C
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2171055
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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