Variant Details

Variant: esv2168060

Internal ID

7492485

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr12:27558492..27558606	hg38	UCSC Ensembl
Outer	chr12:27558323..27558791	hg38	UCSC Ensembl
Inner	chr12:27711425..27711539	hg19	UCSC Ensembl
Outer	chr12:27711256..27711724	hg19	UCSC Ensembl
Inner	chr12:27602692..27602806	hg18	UCSC Ensembl
Outer	chr12:27602523..27602991	hg18	UCSC Ensembl

Cytoband

12p11.23

Allele length

Assembly	Allele length
hg38	469
hg19	469
hg18	469

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4763518

Samples

NA18507

Known Genes

PPFIBP1

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2168060

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a