Variant Details

Variant: esv2167684

Internal ID

7838795

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr6:3327000..3327074	hg38	UCSC Ensembl
Outer	chr6:3326855..3327232	hg38	UCSC Ensembl
Inner	chr6:3327234..3327308	hg19	UCSC Ensembl
Outer	chr6:3327089..3327466	hg19	UCSC Ensembl
Inner	chr6:3272233..3272307	hg18	UCSC Ensembl
Outer	chr6:3272088..3272465	hg18	UCSC Ensembl

Cytoband

6p25.2

Allele length

Assembly	Allele length
hg38	378
hg19	378
hg18	378

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4903949

Samples

NA18507

Known Genes

SLC22A23

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2167684

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a