A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2166281



Internal ID7837392
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:137311768..137311998hg38UCSC Ensembl
Outerchr7:137311567..137312197hg38UCSC Ensembl
Innerchr7:136996515..136996745hg19UCSC Ensembl
Outerchr7:136996314..136996944hg19UCSC Ensembl
Innerchr7:136647055..136647285hg18UCSC Ensembl
Outerchr7:136646854..136647484hg18UCSC Ensembl
Cytoband7q33
Allele length
AssemblyAllele length
hg38631
hg19631
hg18631
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4574507
SamplesNA18507
Known GenesPTN
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2166281
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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