Internal ID | 11038793 |
Landmark | |
Location Information | |
Cytoband | 11q25 |
Allele length | Assembly | Allele length | hg38 | 3184 | hg19 | 3184 | hg18 | 3184 |
|
Variant Type | CNV loss |
Copy Number | |
Allele State | |
Allele Origin | |
Probe Count | |
Validation Flag | |
Merged Status | M |
Merged Variants | |
Supporting Variants | esv13486 |
Samples | NA12489, NA18858, NA18909, NA19108, NA07037, NA18511 |
Known Genes | JAM3 |
Method | Oligo aCGH |
Analysis | Segment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls. |
Platform | Sanger H. Sapiens 42mCGH Array 5781_53 726K v1 |
Comments | |
Reference | Conrad_et_al_2009 |
Pubmed ID | 19812545 |
Accession Number(s) | esv21560
|
Frequency | Sample Size | 40 | Observed Gain | 0 | Observed Loss | 6 | Observed Complex | 0 | Frequency | n/a |
|