A curated catalogue of human genomic structural variation

Variant Details

Variant: esv21531

Internal ID11038765
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:82391087..82545201hg38UCSC Ensembl
Innerchr15:82683298..82829609hg19UCSC Ensembl
Innerchr15:80470353..80616664hg18UCSC Ensembl
Allele length
AssemblyAllele length
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv18177, esv16001, esv13479, esv13473, esv16849, esv17731, esv18754, esv18531
SamplesNA12489, NA18861, NA18523, NA19114, NA18511, NA12828, NA18517, NA12776, NA19257, NA19108, NA18505, NA12044, NA12004, NA11894, NA18916, NA19190, NA12239, NA19129, NA18858, NA18909, NA12749, NA19099, NA12878, NA19225
Known GenesCSPG4P8, GOLGA6L20, GOLGA6L9, LOC440300, LOC80154, RPS17, RPS17L, UBE2Q2P2, UBE2Q2P3
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Pubmed ID19812545
Accession Number(s)esv21531
Sample Size40
Observed Gain19
Observed Loss7
Observed Complex0

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