A curated catalogue of human genomic structural variation




Variant Details

Variant: esv21515



Internal ID11038749
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:179486499..179489197hg38UCSC Ensembl
Innerchr1:179455634..179458332hg19UCSC Ensembl
Innerchr1:177722257..177724955hg18UCSC Ensembl
Cytoband1q25.2
Allele length
AssemblyAllele length
hg382699
hg192699
hg182699
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsesv11393
SamplesNA18511, NA11995, NA19190
Known GenesAXDND1
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv21515
Frequency
Sample Size40
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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