Variant Details

Variant: esv2150356

Internal ID

7821467

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr17:3867976..3868266	hg38	UCSC Ensembl
Outer	chr17:3867849..3868418	hg38	UCSC Ensembl
Inner	chr17:3771270..3771560	hg19	UCSC Ensembl
Outer	chr17:3771143..3771712	hg19	UCSC Ensembl
Inner	chr17:3718019..3718309	hg18	UCSC Ensembl
Outer	chr17:3717892..3718461	hg18	UCSC Ensembl

Cytoband

17p13.2

Allele length

Assembly	Allele length
hg38	570
hg19	570
hg18	570

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4685717

Samples

NA18507

Known Genes

CAMKK1

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2150356

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a