A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2142865



Internal ID7813976
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:134665245..134665671hg38UCSC Ensembl
Outerchr7:134665062..134665861hg38UCSC Ensembl
Innerchr7:134349997..134350423hg19UCSC Ensembl
Outerchr7:134349814..134350613hg19UCSC Ensembl
Innerchr7:134000537..134000963hg18UCSC Ensembl
Outerchr7:134000354..134001153hg18UCSC Ensembl
Cytoband7q33
Allele length
AssemblyAllele length
hg38800
hg19800
hg18800
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4921907
SamplesNA18507
Known GenesBPGM
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2142865
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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