A curated catalogue of human genomic structural variation




Variant Details

Variant: esv21427



Internal ID11038661
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:237521631..237522592hg38UCSC Ensembl
Innerchr2:238430274..238431235hg19UCSC Ensembl
Innerchr2:238095013..238095974hg18UCSC Ensembl
Cytoband2q37.3
Allele length
AssemblyAllele length
hg38962
hg19962
hg18962
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv22555
Supporting Variantsessv53623
SamplesNA18508
Known GenesMLPH
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv21427
Frequency
Sample Size40
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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