A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2141048



Internal ID7465473
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:28557025..28557240hg38UCSC Ensembl
Outerchr7:28556843..28557421hg38UCSC Ensembl
Innerchr7:28596643..28596858hg19UCSC Ensembl
Outerchr7:28596461..28597039hg19UCSC Ensembl
Innerchr7:28563168..28563383hg18UCSC Ensembl
Outerchr7:28562986..28563564hg18UCSC Ensembl
Cytoband7p15.1
Allele length
AssemblyAllele length
hg38579
hg19579
hg18579
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4958697
SamplesNA18507
Known GenesCREB5
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2141048
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer