A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2132100



Internal ID7803211
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr17:39291897..39292507hg38UCSC Ensembl
Outerchr17:39291713..39292687hg38UCSC Ensembl
Innerchr17:37448150..37448760hg19UCSC Ensembl
Outerchr17:37447966..37448940hg19UCSC Ensembl
Innerchr17:34701676..34702286hg18UCSC Ensembl
Outerchr17:34701492..34702466hg18UCSC Ensembl
Cytoband17q12
Allele length
AssemblyAllele length
hg38975
hg19975
hg18975
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4842944
SamplesNA18507
Known GenesFBXL20
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2132100
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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