Variant Details

Variant: esv2127014

Internal ID

7451439

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr2:166201453..166201624	hg38	UCSC Ensembl
Outer	chr2:166201334..166201751	hg38	UCSC Ensembl
Inner	chr2:167057963..167058134	hg19	UCSC Ensembl
Outer	chr2:167057844..167058261	hg19	UCSC Ensembl
Inner	chr2:166766209..166766380	hg18	UCSC Ensembl
Outer	chr2:166766090..166766507	hg18	UCSC Ensembl

Cytoband

2q24.3

Allele length

Assembly	Allele length
hg38	418
hg19	418
hg18	418

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4981084

Samples

NA18507

Known Genes

SCN9A

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2127014

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a