A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2117994



Internal ID7442419
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:22897655..22897930hg38UCSC Ensembl
Outerchr16:22897474..22898127hg38UCSC Ensembl
Innerchr16:22908976..22909251hg19UCSC Ensembl
Outerchr16:22908795..22909448hg19UCSC Ensembl
Innerchr16:22816477..22816752hg18UCSC Ensembl
Outerchr16:22816296..22816949hg18UCSC Ensembl
Cytoband16p12.1
Allele length
AssemblyAllele length
hg38654
hg19654
hg18654
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4935812
SamplesNA18507
Known GenesHS3ST2
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2117994
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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