A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2114978



Internal ID7439403
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:150366570..150366956hg38UCSC Ensembl
Outerchr5:150366421..150367053hg38UCSC Ensembl
Innerchr5:149746133..149746519hg19UCSC Ensembl
Outerchr5:149745984..149746616hg19UCSC Ensembl
Innerchr5:149726326..149726712hg18UCSC Ensembl
Outerchr5:149726177..149726809hg18UCSC Ensembl
Cytoband5q32
Allele length
AssemblyAllele length
hg38633
hg19633
hg18633
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4660973
SamplesNA18507
Known GenesTCOF1
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2114978
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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