A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2105142



Internal ID7776253
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:52632927..52633026hg38UCSC Ensembl
Outerchr4:52632790..52633162hg38UCSC Ensembl
Innerchr4:53499094..53499193hg19UCSC Ensembl
Outerchr4:53498957..53499329hg19UCSC Ensembl
Innerchr4:53193851..53193950hg18UCSC Ensembl
Outerchr4:53193714..53194086hg18UCSC Ensembl
Cytoband4q12
Allele length
AssemblyAllele length
hg38373
hg19373
hg18373
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4895024
SamplesNA18507
Known GenesUSP46
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2105142
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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