Variant Details

Variant: esv2102930

Internal ID

7427355

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr15:77618532..77618893	hg38	UCSC Ensembl
Outer	chr15:77618336..77619096	hg38	UCSC Ensembl
Inner	chr15:77910874..77911235	hg19	UCSC Ensembl
Outer	chr15:77910678..77911438	hg19	UCSC Ensembl
Inner	chr15:75697929..75698290	hg18	UCSC Ensembl
Outer	chr15:75697733..75698493	hg18	UCSC Ensembl

Cytoband

15q24.3

Allele length

Assembly	Allele length
hg38	761
hg19	761
hg18	761

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4895439

Samples

NA18507

Known Genes

LINGO1

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2102930

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a