A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2078095



Internal ID7749206
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr13:110480898..110481223hg38UCSC Ensembl
Outerchr13:110480758..110481321hg38UCSC Ensembl
Innerchr13:111133245..111133570hg19UCSC Ensembl
Outerchr13:111133105..111133668hg19UCSC Ensembl
Innerchr13:109931246..109931571hg18UCSC Ensembl
Outerchr13:109931106..109931669hg18UCSC Ensembl
Cytoband13q34
Allele length
AssemblyAllele length
hg38564
hg19564
hg18564
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4539518
SamplesNA18507
Known GenesCOL4A2
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2078095
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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