Variant Details

Variant: esv2054419

Internal ID

7725530

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr17:60548389..60548589	hg38	UCSC Ensembl
Outer	chr17:60548325..60548673	hg38	UCSC Ensembl
Inner	chr17:58625750..58625950	hg19	UCSC Ensembl
Outer	chr17:58625686..58626034	hg19	UCSC Ensembl
Inner	chr17:55980532..55980732	hg18	UCSC Ensembl
Outer	chr17:55980468..55980816	hg18	UCSC Ensembl

Cytoband

17q23.2

Allele length

Assembly	Allele length
hg38	349
hg19	349
hg18	349

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4893689

Samples

NA18507

Known Genes

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2054419

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a