A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2053432



Internal ID7724543
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:196511062..196511309hg38UCSC Ensembl
Outerchr3:196510977..196511370hg38UCSC Ensembl
Innerchr3:196237933..196238180hg19UCSC Ensembl
Outerchr3:196237848..196238241hg19UCSC Ensembl
Innerchr3:197722330..197722577hg18UCSC Ensembl
Outerchr3:197722245..197722638hg18UCSC Ensembl
Cytoband3q29
Allele length
AssemblyAllele length
hg38394
hg19394
hg18394
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4568454
SamplesNA18507
Known GenesC3orf43
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2053432
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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