A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2039684



Internal ID7710795
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:150382883..150383211hg38UCSC Ensembl
OuterchrX:150382685..150383400hg38UCSC Ensembl
InnerchrX:149551151..149551479hg19UCSC Ensembl
OuterchrX:149550953..149551668hg19UCSC Ensembl
InnerchrX:149301809..149302137hg18UCSC Ensembl
OuterchrX:149301611..149302326hg18UCSC Ensembl
CytobandXq28
Allele length
AssemblyAllele length
hg38716
hg19716
hg18716
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4841849
SamplesNA18507
Known GenesMAMLD1
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2039684
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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