A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2036557



Internal ID7360982
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:88951038..88951354hg38UCSC Ensembl
Outerchr16:88950982..88951422hg38UCSC Ensembl
Innerchr16:89017446..89017762hg19UCSC Ensembl
Outerchr16:89017390..89017830hg19UCSC Ensembl
Innerchr16:87544947..87545263hg18UCSC Ensembl
Outerchr16:87544891..87545331hg18UCSC Ensembl
Cytoband16q24.3
Allele length
AssemblyAllele length
hg38441
hg19441
hg18441
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4616947
SamplesNA18507
Known GenesCBFA2T3
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2036557
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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