A curated catalogue of human genomic structural variation




Variant Details

Variant: esv20332



Internal ID11037566
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:675417..677340hg38UCSC Ensembl
Innerchr6:675417..677340hg19UCSC Ensembl
Innerchr6:620417..622340hg18UCSC Ensembl
Cytoband6p25.3
Allele length
AssemblyAllele length
hg381924
hg191924
hg181924
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv27485
Supporting Variantsessv53633, essv66192, essv79324, essv78558, essv43410, essv50905, essv71494, essv41051, essv58065, essv55917, essv73439, essv59813, essv44340, essv82159, essv32393, essv36498, essv75772, essv56870, essv62847, essv55275, essv34247, essv66790, essv49362, essv39021, essv52390, essv47906, essv74493
SamplesNA12489, NA18861, NA18523, NA19114, NA11931, NA12828, NA18517, NA12776, NA19108, NA15510, NA12287, NA19147, NA12414, NA18508, NA12004, NA18916, NA12006, NA06985, NA18502, NA18907, NA18909, NA12749, NA12156, NA19099, NA12878, NA11993, NA19240
Known GenesEXOC2
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv20332
Frequency
Sample Size40
Observed Gain0
Observed Loss27
Observed Complex0
Frequencyn/a


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