A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2019878



Internal ID7690989
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:53353730..53353880hg38UCSC Ensembl
Outerchr4:53353579..53354027hg38UCSC Ensembl
Innerchr4:54219897..54220047hg19UCSC Ensembl
Outerchr4:54219746..54220194hg19UCSC Ensembl
Innerchr4:53914654..53914804hg18UCSC Ensembl
Outerchr4:53914503..53914951hg18UCSC Ensembl
Cytoband4q12
Allele length
AssemblyAllele length
hg38449
hg19449
hg18449
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4980538
SamplesNA18507
Known GenesSCFD2
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2019878
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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