Variant Details

Variant: esv2015860

Internal ID

7686971

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:217580748..217581033	hg38	UCSC Ensembl
Outer	chr1:217580529..217581238	hg38	UCSC Ensembl
Inner	chr1:217754090..217754375	hg19	UCSC Ensembl
Outer	chr1:217753871..217754580	hg19	UCSC Ensembl
Inner	chr1:215820713..215820998	hg18	UCSC Ensembl
Outer	chr1:215820494..215821203	hg18	UCSC Ensembl

Cytoband

1q41

Allele length

Assembly	Allele length
hg38	710
hg19	710
hg18	710

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4894103

Samples

NA18507

Known Genes

GPATCH2

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2015860

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a