A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2005167



Internal ID7676278
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr13:113336755..113336801hg38UCSC Ensembl
Outerchr13:113336547..113337007hg38UCSC Ensembl
Innerchr13:113991070..113991116hg19UCSC Ensembl
Outerchr13:113990862..113991322hg19UCSC Ensembl
Innerchr13:113039071..113039117hg18UCSC Ensembl
Outerchr13:113038863..113039323hg18UCSC Ensembl
Cytoband13q34
Allele length
AssemblyAllele length
hg38461
hg19461
hg18461
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4838281
SamplesNA18507
Known GenesGRTP1
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2005167
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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