A curated catalogue of human genomic structural variation




Variant Details

Variant: esv2002103



Internal ID7673215
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:236560039..236560089hg38UCSC Ensembl
Outerchr1:236559858..236560261hg38UCSC Ensembl
Innerchr1:236723339..236723389hg19UCSC Ensembl
Outerchr1:236723158..236723561hg19UCSC Ensembl
Innerchr1:234789962..234790012hg18UCSC Ensembl
Outerchr1:234789781..234790184hg18UCSC Ensembl
Cytoband1q43
Allele length
AssemblyAllele length
hg38404
hg19404
hg18404
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4946157
SamplesNA18507
Known GenesHEATR1
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv2002103
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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