Variant Details

Variant: esv2000244

Internal ID

7324669

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:3299068..3299827	hg38	UCSC Ensembl
Outer	chr1:3298967..3299892	hg38	UCSC Ensembl
Inner	chr1:3215632..3216391	hg19	UCSC Ensembl
Outer	chr1:3215531..3216456	hg19	UCSC Ensembl
Inner	chr1:3205492..3206251	hg18	UCSC Ensembl
Outer	chr1:3205391..3206316	hg18	UCSC Ensembl

Cytoband

1p36.32

Allele length

Assembly	Allele length
hg38	926
hg19	926
hg18	926

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4511826

Samples

NA18507

Known Genes

PRDM16

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv2000244

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a