A curated catalogue of human genomic structural variation




Variant Details

Variant: esv1994448



Internal ID7318873
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:132213032..132213256hg38UCSC Ensembl
Outerchr12:132212910..132213364hg38UCSC Ensembl
Innerchr12:132697577..132697801hg19UCSC Ensembl
Outerchr12:132697455..132697909hg19UCSC Ensembl
Innerchr12:131263530..131263754hg18UCSC Ensembl
Outerchr12:131263408..131263862hg18UCSC Ensembl
Cytoband12q24.33
Allele length
AssemblyAllele length
hg38455
hg19455
hg18455
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4537623
SamplesNA18507
Known GenesGALNT9
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv1994448
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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