Variant Details

Variant: esv1993198

Internal ID

7317623

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr10:29594283..29594340	hg38	UCSC Ensembl
Outer	chr10:29594094..29594524	hg38	UCSC Ensembl
Inner	chr10:29883212..29883269	hg19	UCSC Ensembl
Outer	chr10:29883023..29883453	hg19	UCSC Ensembl
Inner	chr10:29923218..29923275	hg18	UCSC Ensembl
Outer	chr10:29923029..29923459	hg18	UCSC Ensembl

Cytoband

10p11.23

Allele length

Assembly	Allele length
hg38	431
hg19	431
hg18	431

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4848818

Samples

NA18507

Known Genes

SVIL

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv1993198

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a