Variant Details

Variant: esv1980460

Internal ID

7651572

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr6:148387582..148387661	hg38	UCSC Ensembl
Outer	chr6:148387388..148387853	hg38	UCSC Ensembl
Inner	chr6:148708718..148708797	hg19	UCSC Ensembl
Outer	chr6:148708524..148708989	hg19	UCSC Ensembl
Inner	chr6:148750411..148750490	hg18	UCSC Ensembl
Outer	chr6:148750217..148750682	hg18	UCSC Ensembl

Cytoband

6q24.3

Allele length

Assembly	Allele length
hg38	466
hg19	466
hg18	466

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4734030

Samples

NA18507

Known Genes

SASH1

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv1980460

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a