A curated catalogue of human genomic structural variation




Variant Details

Variant: esv1966921



Internal ID7291346
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:120494758..120497451hg38UCSC Ensembl
Outerchr9:120494561..120497651hg38UCSC Ensembl
Innerchr9:123257036..123259729hg19UCSC Ensembl
Outerchr9:123256839..123259929hg19UCSC Ensembl
Innerchr9:122296857..122299550hg18UCSC Ensembl
Outerchr9:122296660..122299750hg18UCSC Ensembl
Cytoband9q33.2
Allele length
AssemblyAllele length
hg383091
hg193091
hg183091
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4762008
SamplesNA18507
Known GenesCDK5RAP2
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv1966921
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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