Variant Details

Variant: esv1964556

Internal ID

7635668

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr3:155693184..155693543	hg38	UCSC Ensembl
Outer	chr3:155693044..155693673	hg38	UCSC Ensembl
Inner	chr3:155410973..155411332	hg19	UCSC Ensembl
Outer	chr3:155410833..155411462	hg19	UCSC Ensembl
Inner	chr3:156893667..156894026	hg18	UCSC Ensembl
Outer	chr3:156893527..156894156	hg18	UCSC Ensembl

Cytoband

3q25.31

Allele length

Assembly	Allele length
hg38	630
hg19	630
hg18	630

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4629714

Samples

NA18507

Known Genes

PLCH1

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv1964556

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a