A curated catalogue of human genomic structural variation




Variant Details

Variant: esv19573



Internal ID11383492
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:47546231..47739121hg38UCSC Ensembl
Innerchr10:47227797..47429141hg19UCSC Ensembl
Innerchr10:46647803..46849147hg18UCSC Ensembl
Cytoband10q11.22
Allele length
AssemblyAllele length
hg38192891
hg19201345
hg18201345
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv22204
Supporting Variantsessv57509, essv78030, essv53394, essv49455, essv83615, essv72743, essv32968, essv48189, essv81616, essv45529, essv33976, essv69593, essv55695, essv38710, essv47048, essv60579, essv44162, essv42558, essv62398, essv51390, essv35742
SamplesNA18502, NA18861, NA18508, NA11931, NA19190, NA12044, NA11993, NA12489, NA18907, NA19114, NA15510, NA19099, NA19257, NA19225, NA06985, NA18523, NA18909, NA19147, NA18517, NA07037, NA19129
Known GenesBMS1P2, BMS1P6, FAM35DP
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv19573
Frequency
Sample Size40
Observed Gain0
Observed Loss21
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer