A curated catalogue of human genomic structural variation




Variant Details

Variant: esv1949981



Internal ID7599428
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:43260600..43260950hg38UCSC Ensembl
Outerchr12:43260432..43261125hg38UCSC Ensembl
Innerchr12:43654403..43654753hg19UCSC Ensembl
Outerchr12:43654235..43654928hg19UCSC Ensembl
Innerchr12:41940670..41941020hg18UCSC Ensembl
Outerchr12:41940502..41941195hg18UCSC Ensembl
Cytoband12q12
Allele length
AssemblyAllele length
hg38694
hg19694
hg18694
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsessv4577077
SamplesNA18507
Known Genes
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)esv1949981
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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