Variant Details

Variant: esv1940942

Internal ID

7265367

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr5:159165403..159165728	hg38	UCSC Ensembl
Outer	chr5:159165199..159165937	hg38	UCSC Ensembl
Inner	chr5:158592411..158592736	hg19	UCSC Ensembl
Outer	chr5:158592207..158592945	hg19	UCSC Ensembl
Inner	chr5:158524989..158525314	hg18	UCSC Ensembl
Outer	chr5:158524785..158525523	hg18	UCSC Ensembl

Cytoband

5q33.3

Allele length

Assembly	Allele length
hg38	739
hg19	739
hg18	739

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4975305

Samples

NA18507

Known Genes

RNF145

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv1940942

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a