A curated catalogue of human genomic structural variation




Variant Details

Variant: esv19304



Internal ID11036538
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:109672390..109702309hg38UCSC Ensembl
Innerchr1:110215012..110244931hg19UCSC Ensembl
Innerchr1:110016535..110046454hg18UCSC Ensembl
Cytoband1p13.3
Allele length
AssemblyAllele length
hg3829920
hg1929920
hg1829920
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv25172
Supporting Variantsessv69598, essv64169, essv43027, essv46612, essv34163, essv49472, essv79527, essv72767, essv80806, essv74431, essv61970, essv78614, essv40876, essv68770, essv49046, essv59109, essv52122
SamplesNA18502, NA11995, NA12004, NA12044, NA12878, NA07045, NA12239, NA19225, NA06985, NA18858, NA18909, NA19108, NA18517, NA07037, NA12749, NA19129, NA12006
Known GenesGSTM1, GSTM2
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv19304
Frequency
Sample Size40
Observed Gain17
Observed Loss0
Observed Complex0
Frequencyn/a


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