A curated catalogue of human genomic structural variation




Variant Details

Variant: esv19282



Internal ID11036516
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:46157966..46333769hg38UCSC Ensembl
Innerchr10:47529202..47705005hg19UCSC Ensembl
Innerchr10:46999208..47175011hg18UCSC Ensembl
Cytoband10q11.22
Allele length
AssemblyAllele length
hg38175804
hg19175804
hg18175804
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv28391
Supporting Variantsessv37956, essv54016, essv39707, essv43138, essv54783, essv51392, essv56496, essv33194, essv77573, essv81304, essv46659, essv72109, essv63292, essv41224, essv83511, essv36203, essv47142, essv71390, essv80642, essv61892, essv34838
SamplesNA18502, NA11995, NA18861, NA18508, NA11931, NA19190, NA18916, NA12287, NA18907, NA19114, NA12239, NA15510, NA19099, NA19257, NA19225, NA06985, NA18909, NA19147, NA18505, NA19129, NA12776
Known GenesANTXRL, ANTXRLP1
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv19282
Frequency
Sample Size40
Observed Gain0
Observed Loss21
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer