A curated catalogue of human genomic structural variation




Variant Details

Variant: esv19194



Internal ID11383113
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:56122694..56124294hg38UCSC Ensembl
Innerchr5:55418521..55420121hg19UCSC Ensembl
Innerchr5:55454278..55455878hg18UCSC Ensembl
Cytoband5q11.2
Allele length
AssemblyAllele length
hg381601
hg191601
hg181601
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv23752
Supporting Variantsessv50010, essv47723
SamplesNA18861, NA18517
Known GenesANKRD55
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv19194
Frequency
Sample Size40
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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