Variant Details

Variant: esv1916461

Internal ID

7246429

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr8:42988620..42988669	hg38	UCSC Ensembl
Outer	chr8:42988441..42988853	hg38	UCSC Ensembl
Inner	chr8:42843763..42843812	hg19	UCSC Ensembl
Outer	chr8:42843584..42843996	hg19	UCSC Ensembl
Inner	chr8:42962920..42962969	hg18	UCSC Ensembl
Outer	chr8:42962741..42963153	hg18	UCSC Ensembl

Cytoband

8p11.21

Allele length

Assembly	Allele length
hg38	413
hg19	413
hg18	413

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

essv4544682

Samples

NA18507

Known Genes

HOOK3

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

esv1916461

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a