A curated catalogue of human genomic structural variation




Variant Details

Variant: esv19038



Internal ID11036272
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:666425..667789hg38UCSC Ensembl
Innerchr6:666425..667789hg19UCSC Ensembl
Innerchr6:611425..612789hg18UCSC Ensembl
Cytoband6p25.3
Allele length
AssemblyAllele length
hg381365
hg191365
hg181365
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv26846
Supporting Variantsessv56155, essv75077, essv55163, essv68112, essv73453, essv58822, essv71217, essv49238, essv43832, essv63169, essv75919, essv40367, essv78245, essv41200, essv52161, essv39020, essv60345, essv64556, essv65441, essv36417, essv33726, essv80132
SamplesNA18502, NA11995, NA12414, NA12004, NA18916, NA12287, NA12156, NA12878, NA18907, NA07045, NA15510, NA19099, NA06985, NA18523, NA18858, NA18909, NA19108, NA19240, NA07037, NA18505, NA12006, NA12776
Known GenesEXOC2
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv19038
Frequency
Sample Size40
Observed Gain0
Observed Loss22
Observed Complex0
Frequencyn/a


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