A curated catalogue of human genomic structural variation

Variant Details

Variant: esv18546

Internal ID11035780
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr19:54734352..54867546hg38UCSC Ensembl
Innerchr19:55245819..55379001hg19UCSC Ensembl
Innerchr19:59937631..60070813hg18UCSC Ensembl
Allele length
AssemblyAllele length
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv26630
Supporting Variantsessv58303, essv38408, essv54036, essv60048, essv63291
SamplesNA18523, NA19257, NA19108, NA15510, NA18508
Known GenesKIR2DL1, KIR2DL3, KIR2DL4, KIR2DS4, KIR3DL1, KIR3DL2, KIR3DL3, LOC100287534
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Pubmed ID19812545
Accession Number(s)esv18546
Sample Size40
Observed Gain5
Observed Loss0
Observed Complex0

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