Variant DetailsVariant: esv18116Internal ID | 11035350 | Landmark | | Location Information | | Cytoband | 1p36.32 | Allele length | Assembly | Allele length | hg38 | 60932 | hg19 | 60932 | hg18 | 60932 |
| Variant Type | CNV gain+loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | esv21805 | Supporting Variants | essv57050, essv52698, essv72764, essv34942, essv62441, essv82638, essv44606, essv47280, essv60000, essv43577, essv58422, essv35932, essv53641, essv68066, essv54557, essv49750 | Samples | NA18502, NA18861, NA18508, NA19190, NA11993, NA12489, NA18907, NA15510, NA19099, NA19225, NA18523, NA18858, NA18909, NA19108, NA18517, NA12006 | Known Genes | TTC34 | Method | Oligo aCGH | Analysis | Segment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls. | Platform | Sanger H. Sapiens 42mCGH Array 5781_53 726K v1 | Comments | | Reference | Conrad_et_al_2009 | Pubmed ID | 19812545 | Accession Number(s) | esv18116
| Frequency | Sample Size | 40 | Observed Gain | 14 | Observed Loss | 2 | Observed Complex | 0 | Frequency | n/a |
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