A curated catalogue of human genomic structural variation




Variant Details

Variant: esv18028



Internal ID11035262
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:4340813..4476244hg38UCSC Ensembl
Innerchr16:4390814..4526245hg19UCSC Ensembl
Innerchr16:4330815..4466246hg18UCSC Ensembl
Cytoband16p13.3
Allele length
AssemblyAllele length
hg38135432
hg19135432
hg18135432
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv23732
Supporting Variantsessv76495, essv74397, essv48752, essv64309
SamplesNA12004, NA07045, NA07037, NA18511
Known GenesCORO7, CORO7-PAM16, DNAJA3, HMOX2, NMRAL1, PAM16, VASN
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv18028
Frequency
Sample Size40
Observed Gain4
Observed Loss0
Observed Complex0
Frequencyn/a


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