Variant DetailsVariant: esv17565 Internal ID | 11034799 | Landmark | | Location Information | | Cytoband | 6p21.32 | Allele length | Assembly | Allele length | hg38 | 6470 | hg19 | 6470 | hg18 | 6470 |
| Variant Type | CNV loss | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | esv28110 | Supporting Variants | essv72678, essv62782, essv68522, essv51989, essv66382, essv44978, essv57880, essv59133, essv50324, essv43001, essv70858, essv52950, essv34201, essv32841, essv36462, essv76816 | Samples | NA18502, NA18508, NA18916, NA11993, NA12489, NA18907, NA15510, NA19225, NA18858, NA18909, NA19108, NA19147, NA18517, NA19240, NA12006, NA18511 | Known Genes | C4A, C4B, C4B_2 | Method | Oligo aCGH | Analysis | Segment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls. | Platform | Sanger H. Sapiens 42mCGH Array 5781_53 726K v1 | Comments | | Reference | Conrad_et_al_2009 | Pubmed ID | 19812545 | Accession Number(s) | esv17565
| Frequency | Sample Size | 40 | Observed Gain | 0 | Observed Loss | 16 | Observed Complex | 0 | Frequency | n/a |
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