A curated catalogue of human genomic structural variation




Variant Details

Variant: esv17468



Internal ID11034702
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:29814237..29955498hg38UCSC Ensembl
Innerchr6:29782014..29923275hg19UCSC Ensembl
Innerchr6:29889993..30031254hg18UCSC Ensembl
Cytoband6p21.33
Allele length
AssemblyAllele length
hg38141262
hg19141262
hg18141262
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv25966
Supporting Variantsessv77869, essv60130, essv48158, essv49979, essv82494, essv51763, essv50782, essv71120
SamplesNA11931, NA18916, NA19114, NA06985, NA18523, NA18517, NA07037, NA12006
Known GenesHCG4B, HLA-A, HLA-G, HLA-H
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv17468
Frequency
Sample Size40
Observed Gain8
Observed Loss0
Observed Complex0
Frequencyn/a


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