A curated catalogue of human genomic structural variation




Variant Details

Variant: esv17467



Internal ID11034701
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:1295148..1298876hg38UCSC Ensembl
InnerchrX:1414041..1417769hg19UCSC Ensembl
InnerchrX:1374041..1377769hg18UCSC Ensembl
CytobandXp22.33
Allele length
AssemblyAllele length
hg383729
hg193729
hg183729
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsesv21933
Supporting Variantsessv45956, essv70237, essv53706, essv76961, essv42695, essv59174, essv39905
SamplesNA18508, NA18916, NA12287, NA18909, NA19108, NA19129, NA18511
Known GenesCSF2RA
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)esv17467
Frequency
Sample Size40
Observed Gain1
Observed Loss6
Observed Complex0
Frequencyn/a


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